FastQCFastQC Report
Wed 8 May 2024
EGAF00007961569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493978
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19630.3973861184101316No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17380.35183753122608696No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16700.33807173598824236No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13600.275315904756892No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13290.26904032163375696No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9690.19616258213928556No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8680.17571632744778107No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7310.14798229880682945No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA6850.1386701432047581No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5990.12126046099218994No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5440.1101263619027568No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5360.10850685658065744No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5180.10486296960593387No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)