FastQCFastQC Report
Wed 8 May 2024
EGAF00007961571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476221
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24620.5169868611422008No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18540.3893150449056216No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16030.3366084234000601No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15780.3313587599034902No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12930.2715125960425937No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12840.2696227171838285No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8800.18478815507925941No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8450.1774386261840616No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6880.14447073942560282No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA6310.1325015066534235No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5210.10940298726851609No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5150.10814306802933932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)