FastQCFastQC Report
Wed 8 May 2024
EGAF00007961572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508032
Total Bases22.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG16050.31592498110355255No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14700.28935185185185186No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13780.27124275636180395No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11500.2263636936255984No Hit
GTTGTAGTGCGCGTCACGACCGCGAGTGGTGGTAGTCGTAGCGG10180.20038107835726884No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6810.13404667422524566No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5370.1057020030234316No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5190.10215891912320485No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)