FastQCFastQC Report
Wed 8 May 2024
EGAF00007961573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508032
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34380.6767290249433107No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC16080.31651549508692367No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11800.23226883345930965No Hit
ATTTCTGCATTCTCTGGTTCCTATAGCTCCG10870.21396289997480475No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7250.14270754598135552No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6570.12932256235827663No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6230.1226300705467372No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5500.10826089695137313No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)