FastQCFastQC Report
Wed 8 May 2024
EGAF00007961574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489407
Total Bases21.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG15040.30731068415449714No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13580.27747866295332924No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12820.26194966561573496No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10430.21311505556724772No Hit
GTTGTAGTGCGCGTCACGACCGCGAGTGGTGGTAGTCGTAGCGG10230.20902847732051236No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6660.13608305561628667No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5160.10543371876577165No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5110.10441207420408781No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)