FastQCFastQC Report
Wed 8 May 2024
EGAF00007961575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489407
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31450.6426144292991315No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24120.4928413365562814No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC14810.30261111917075156No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10650.21761029163865656No Hit
ATTTCTGCATTCTCTGGTTCCTATAGCTCCG10570.21597566033996246No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7050.14405188319742054No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6220.1270925834734689No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5260.1074770078891393No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5100.10420774529175103No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)