FastQCFastQC Report
Wed 8 May 2024
EGAF00007961576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510732
Total Bases22.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG16460.3222825278228112No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15120.296045675618524No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13930.2727457844818809No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11810.23123673472584447No Hit
GTTGTAGTGCGCGTCACGACCGCGAGTGGTGGTAGTCGTAGCGG10160.1989301629817595No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6770.13255484285300312No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5770.11297510240204256No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5270.10318523217656225No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)