FastQCFastQC Report
Wed 8 May 2024
EGAF00007961577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510732
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34540.6762842351761785No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC16390.32091194599124395No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11690.22888716587172922No Hit
ATTTCTGCATTCTCTGGTTCCTATAGCTCCG10660.2087200332072398No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7070.13842876498829132No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7040.1378413727747625No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5940.11630365827870585No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5650.11062553354792728No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5270.10318523217656225No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)