FastQCFastQC Report
Wed 8 May 2024
EGAF00007961578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494687
Total Bases21.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG15560.31454232676419636No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14410.29129530389923325No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13510.2731019816570882No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10570.21367046233274778No Hit
GTTGTAGTGCGCGTCACGACCGCGAGTGGTGGTAGTCGTAGCGG9550.19305136379165005No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6530.13200266026800786No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5430.10976637752760836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)