FastQCFastQC Report
Wed 8 May 2024
EGAF00007961579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494687
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33730.6818452880306133No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25770.5209354602000861No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC15350.3102972182410292No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10590.21407475838257323No Hit
ATTTCTGCATTCTCTGGTTCCTATAGCTCCG10190.20598883738606433No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6980.14109932138908038No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6660.13463058459187324No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5300.10713845320374299No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)