FastQCFastQC Report
Wed 8 May 2024
EGAF00007961581

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961581
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546642
Total Bases16.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32200.5890509693730084No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16640.3044039792039397No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16420.300379407363503No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10590.19372825359193038No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9660.1767152908119025No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8370.1531166650202509No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7720.14122588458259702No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7580.13866479341141003No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7150.13079858481419285No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6780.12402998671891294No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6170.11287094661588389No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5950.10884637477544719No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5800.10610234852060398No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5530.10116310126188621No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)