FastQCFastQC Report
Wed 8 May 2024
EGAF00007961583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528681
Total Bases16.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30500.576907435674821No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26560.5023823439843687No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16550.3130432150956815No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14860.28107686865992915No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9950.18820422901522846No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9730.18404292947921336No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7780.14715868359180678No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7270.13751203466740813No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6990.13221583525793437No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6780.12824368570082903No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6720.12710878582737037No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5800.10970698776767086No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5620.10630228814729487No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5510.10422163837928733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)