FastQCFastQC Report
Wed 8 May 2024
EGAF00007961585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549709
Total Bases17 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32140.5846729815229512No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16720.3041609287823194No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16490.2999768968672516No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10190.18537080528061212No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9950.18100485893445442No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7890.14353048612993421No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7310.13297944912671977No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7180.13061456152255102No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6870.124975214158764No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6510.11842629463952746No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6420.11678906475971833No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6170.11224120398247073No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5940.10805717206740294No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5860.1066018566186837No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)