FastQCFastQC Report
Wed 8 May 2024
EGAF00007961587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527916
Total Bases16.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31760.6016108623341592No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26190.49610165253563066No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15550.29455443669068565No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15370.2911448033399253No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9840.1863932898415657No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9340.17692208608945362No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8810.1668826101122148No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7110.13468051735503375No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7090.13430166920494926No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6640.1257775858280484No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6590.1248304654528372No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5880.11138135612483804No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5570.10550920979852856No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5380.10191015237272597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)