FastQCFastQC Report
Wed 8 May 2024
EGAF00007961589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503506
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26960.5354454564593073No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25450.5054557443208224No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22520.4472637863302523No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18490.3672250181725739No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17630.3501447847691984No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16810.33385898082644494No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15000.29791104773329413No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14990.29771244036813865No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC13240.26295615146592094No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC13190.26196311464014327No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11890.23614415716992448No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9860.195826862043352No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9600.19066307054930826No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7750.1539207079955353No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7700.15292767116975764No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7600.15094159751820238No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7590.15074299015304685No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC6490.12889617998593858No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6310.12532124741313908No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5790.11499366442505154No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5590.11102151712194094No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5570.11062430239162989No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5470.10863822874007459No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5280.10486468880211954No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)