FastQCFastQC Report
Wed 8 May 2024
EGAF00007961591

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961591
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484454
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25160.5193475541537483No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24570.5071688952924324No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24240.5003571030479674No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21670.44730769071986193No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA17420.3595800633290261No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16850.347814240361314No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15880.3277916995215232No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14350.2962097536608223No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13950.2879530357887436No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC12960.2675176590553489No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC11910.2458437746411424No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10850.2239634722801339No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9650.1991933186638979No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9440.1948585417810566No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7820.161418834399138No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7160.1477952499102082No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7090.14635032428259442No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6910.142634801240159No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC6420.13252032184686266No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6030.12447002192158595No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5790.11951599119833875No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5380.11105285537945811No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5240.10816300412423056No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5040.10403464518819125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)