FastQCFastQC Report
Wed 8 May 2024
EGAF00007961593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504625
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27150.53802328461729No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26490.5249442655437206No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22310.4421104780777806No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18880.3741392122863512No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17590.3485756750061927No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15970.3164726281892494No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15270.3026009412930394No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14500.2873420857072083No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC13180.26118404756006935No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC12870.2550408719346049No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11780.23344067376764926No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9970.1975724547931632No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9510.18845677483279663No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8300.16447857319791925No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8020.15892989843943522No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7890.15635372801585334No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7770.15397572454793162No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC6810.13495169680455785No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6690.1325736933366361No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6110.12108000990834779No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5830.11553133514986376No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5780.11454050037156303No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5770.1143423334159029No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5700.11295516472628189No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)