FastQCFastQC Report
Wed 8 May 2024
EGAF00007961595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487987
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26160.5360798545862901No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25960.5319813847500036No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25040.5131284235030852No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21950.4498070645324568No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18310.3752149135120403No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17220.3528782529042782No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15940.32664804595204383No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14320.29345044027812217No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13620.27910579585111894No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC12830.26291683999778687No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC12290.25185097143981294No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11420.23402262765196613No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9640.1975462461090152No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9350.1916034648463996No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7660.15697139472977764No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7460.15287292489349102No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7230.1481596845817614No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7150.14652029664724675No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC6230.1276673354003283No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6200.12705256492488531No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5750.11783100779324039No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5610.11496207890783976No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5600.11475715541602544No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5260.10778975669433817No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)