FastQCFastQC Report
Wed 8 May 2024
EGAF00007961596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496458
Total Bases21.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT29130.586756583638495No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT16280.32792300657860285No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15710.31644167281018737No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14710.2962989819884059No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7810.15731441531811352No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7230.14563165464148026No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7130.1436173855593021No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6800.1369702975881142No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC6560.13213605179088664No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6400.1289132212594016No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6300.12689895217722344No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT6200.1248846830950453No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6040.12166185256356025No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5950.11984901038959991No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5650.11380620314306547No Hit
GGAGCTCGGACCTACGTTGGTAACAGTGAACACGTCCGGACGCG5480.11038194570336263No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5270.1061519806307885No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT5040.10151916174177876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)