FastQCFastQC Report
Wed 8 May 2024
EGAF00007961597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496458
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37580.7569623210825488No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29880.6018636017548312No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA17140.3452457206853349No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9720.19578695478771618No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8940.18007565594672661No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7750.15610585386880663No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7290.14684021609078715No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7080.142610251018213No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6830.13757457831276765No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6790.1367688706798964No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6500.13092749034157974No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG6400.1289132212594016No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6290.12669752526900563No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5970.12025186420603555No Hit
CACAAAGCAAAACACATCAAGGCCTGGTGCC5680.11441048386771893No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5620.11320192241841202No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5620.11320192241841202No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5460.10997909188692699No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5440.10957623807049137No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5430.10937481116227354No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5430.10937481116227354No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5380.10836767662118446No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)