FastQCFastQC Report
Wed 8 May 2024
EGAF00007961599

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961599
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477282
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34940.7320619675579636No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT28820.60383588737895No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22130.4636671820852242No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16230.3400505361610117No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8960.18772968601371937No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8620.18060601489266304No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7770.16279683709002224No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6760.14163534346570789No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6650.13933062633830734No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6580.13786398816632517No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG6570.13765446842747053No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6280.13157839600068721No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6220.13032127756755965No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6020.1261308827904677No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5910.12382616566306712No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5810.12173096827452115No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5640.11816913271399299No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5290.11083594185408206No Hit
CACAAAGCAAAACACATCAAGGCCTGGTGCC5280.11062642211522747No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5090.10664554707699012No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5050.10580746812157173No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG4840.10140755360562519No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)