FastQCFastQC Report
Wed 8 May 2024
EGAF00007961600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498894
Total Bases21.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT28700.5752725027761408No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT16780.33634399291232203No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16310.3269231540166849No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14500.29064290209944393No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8090.1621586950334139No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7640.15313874289929322No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7200.14431923414593079No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6810.13650194229635954No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC6630.1328939614427113No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT6530.1308895276351289No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6520.13068908425437067No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6350.12728154678148063No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6000.12026602845494232No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5770.11565583069750288No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5770.11565583069750288No Hit
GGAGCTCGGACCTACGTTGGTAACAGTGAACACGTCCGGACGCG5530.11084518955930518No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5230.10483188813655807No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5210.10443100137504159No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4990.10002124699836037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)