FastQCFastQC Report
Wed 8 May 2024
EGAF00007961601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498894
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38910.7799251945303011No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29210.5854951151948109No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA17720.35518567070359636No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9840.19723628666610543No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9120.18280436325151236No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8200.16436357222175452No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7060.14151302681531547No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7030.14091169667304076No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6850.1373037158193925No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6810.13650194229635954No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG6720.13469795186953543No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6650.13329484820422774No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6490.13008775411209597No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5840.11705893436281055No Hit
CACAAAGCAAAACACATCAAGGCCTGGTGCC5820.11665804760129406No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5560.11144651970157989No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5450.10924164251323927No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5430.1088407557517228No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5360.10743765208641515No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5360.10743765208641515No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5320.1066358785633822No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5310.10643543518262395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)