FastQCFastQC Report
Wed 8 May 2024
EGAF00007961602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478856
Total Bases21 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT28010.5849357635698414No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT16290.3401857760997043No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16180.33788863457908014No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13620.2844278864627362No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7480.15620562340244248No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7370.15390848188181835No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7360.15369965083448886No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6590.13761966019011979No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC6250.13051940458091785No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6050.1263427836343285No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT5960.12446330420836325No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5770.12049551430910335No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5640.11778071069382028No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5580.11652772440984345No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5440.1136040897472309No Hit
GGAGCTCGGACCTACGTTGGTAACAGTGAACACGTCCGGACGCG5030.10504201680672269No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5010.10462435471206374No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT4840.10107422690746279No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)