FastQCFastQC Report
Wed 8 May 2024
EGAF00007961603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478856
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36990.7724660440717043No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT28350.5920360191790434No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22940.4790584225738009No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA17030.35563927360208497No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9350.1952570292530531No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8300.17332976928345892No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7710.16100873749102027No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6900.1440934226573333No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6550.13678433600080192No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6440.13448719448017774No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6420.1340695323855188No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG6290.13135472877023574No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5920.12362798001904539No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5820.1215396695457507No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5790.12091317640376231No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5580.11652772440984345No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5170.10796565146933525No Hit
CACAAAGCAAAACACATCAAGGCCTGGTGCC5150.1075479893746763No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5100.10650383413802897No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5000.10441552366473428No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4930.102953706333428No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG4880.10190955109678065No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)