FastQCFastQC Report
Wed 8 May 2024
EGAF00007961605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461128
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6070.13163373293315522No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5630.12209191374195451No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5620.12187505421488176No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG5130.11124893738831734No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4980.10799604448222619No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)