FastQCFastQC Report
Wed 8 May 2024
EGAF00007961607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443083
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20990.4737261416032662No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5970.1347377353678656No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG5720.1290954516422431No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5520.12458162466174509No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4990.11261998316342536No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)