FastQCFastQC Report
Wed 8 May 2024
EGAF00007961609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463397
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6420.13854211399728528No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5910.1275364320442299No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5620.12127829916896311No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5090.10984102184519969No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG5020.10833043804772151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)