FastQCFastQC Report
Wed 8 May 2024
EGAF00007961611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441366
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22290.5050230421011134No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5880.1332227674990824No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5430.12302714753741793No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5040.11419094357064205No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG4820.10920641825605054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)