FastQCFastQC Report
Wed 8 May 2024
EGAF00007961613

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961613
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556946
Total Bases17.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT33040.5932352508142621No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA22210.39878192858912714No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG21060.3781336072078801No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19310.3467122485842434No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC18090.3248070728580509No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15260.27399424719811255No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG14110.25334592581686555No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12670.22749063643513015No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12540.22515647836594568No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG11520.20684231505388317No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10570.18978500608676604No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG9100.16339106484291116No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG9090.16321151422220465No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8750.1571067931181838No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8670.15567038815253184No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC7990.14346094594449013No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7700.13825397794400174No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7590.1362789211162303No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7270.13053330125362245No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7210.12945599752938347No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6420.11527149849357028No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6380.11455329601074431No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6130.11006453049308193No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5710.10252340442340908No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5600.10054834759563765No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)