FastQCFastQC Report
Wed 8 May 2024
EGAF00007961615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539354
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT30150.5590020654338338No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26720.4954074689350593No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA21200.3930628121790142No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG21130.3917649632708759No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18030.33428879733903893No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC16790.31129833096630416No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14310.26531739822083455No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13290.2464058855593914No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11620.2154429187509502No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11360.21062233709215095No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG11320.2098807091446434No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10810.20042495281392186No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8440.15648349692409808No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8390.15555646198971362No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8300.15388779910782158No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG8170.15147750827842196No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7690.14257797290833107No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC7440.13794279823640873No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6650.12329564627313416No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6490.12032913448310387No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6380.11828965762745802No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6040.11198582007364366No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5760.10679442444109064No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5640.10456954059856792No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)