FastQCFastQC Report
Wed 8 May 2024
EGAF00007961617

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961617
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences560012
Total Bases17.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT32220.5753448140396992No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA22970.4101697820760984No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG21320.38070612772583445No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19460.34749255373099147No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC18750.33481425398027187No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15240.27213702563516495No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG13440.23999485725305889No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13270.23695920801697104No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG12040.21499539295586523No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11210.20017428197967188No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10770.19231730748626816No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG9180.1639250587487411No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG9060.16178224752326736No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8700.15535381384684616No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8690.15517524624472334No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8450.15088962379377585No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC8000.1428540816982493No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6910.12339021306686285No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6910.12339021306686285No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6690.11946172582016099No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6560.11714034699256445No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6150.10981907530552917No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6110.10910480489703793No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6110.10910480489703793No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5860.10464061484396762No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)