FastQCFastQC Report
Wed 8 May 2024
EGAF00007961619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543092
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT30500.5615991397405965No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26540.48868331700706324No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA21100.3885161261811995No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG20850.3839128545439815No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18780.3457977653878164No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC17860.32885772576285416No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15030.27674869082954634No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13330.24544644369646393No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12350.22740161887856938No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11660.21469658915984768No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10790.19867720386232904No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10330.1902071840498479No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8680.1598255912442091No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8630.1589049369167655No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG8190.1508031788352618No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC8150.15006665537330693No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8060.14840947758390843No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7470.13754575652007395No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6730.12392007247390867No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6540.12042158602962297No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6370.11729136131631472No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6190.11397700573751778No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5910.10882134150383362No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)