FastQCFastQC Report
Wed 8 May 2024
EGAF00007961621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497573
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16440.33040377994786696No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14710.2956350123499466No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11810.2373521071279993No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9640.19374041597916286No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8870.17826529976505961No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7450.1497267737598302No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5940.11937946793736799No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5820.11696776151439085No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5660.11375215295042135No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5590.11234532420368469No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)