FastQCFastQC Report
Wed 8 May 2024
EGAF00007961623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479284
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24280.5065889952512498No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14790.308585306415403No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13040.2720725081580023No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11370.23722886639236862No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9300.19403944216790045No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8160.17025396216022234No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6690.1395832116240058No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5940.12393486951369126No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5550.11579773161632768No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5450.11371128600161909No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)