FastQCFastQC Report
Wed 8 May 2024
EGAF00007961625

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961625
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498649
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15340.30763121955523826No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13530.2713331421500896No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11200.22460688781086496No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9540.1913169383674689No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8380.16805408212991504No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7260.14559339334882854No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5860.11751753237247042No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5640.11310561136189987No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5620.11270452763366616No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5470.1096963996719135No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)