FastQCFastQC Report
Wed 8 May 2024
EGAF00007961627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482393
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24450.5068481507816242No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15640.3242169766145031No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13300.2757088100366299No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11420.23673643688859497No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9440.1956910651688561No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8470.17558297902332745No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6620.13723250544680374No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6090.12624561301677265No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6050.12541641358809102No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5880.12189231601619427No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4990.10344262872802881No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)