FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007961636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502966
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG35680.7093918873243916No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT28030.5572941312136407No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21760.4326336173816918No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20080.39923175721619353No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18180.36145584393378477No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA16480.32765634257584014No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15920.3165223891873407No Hit
AATCGGCTGGGCTTTACCGGCGTCCATAACAGACAGAGCACATA15040.2990261767196988No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15030.29882735612347555No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14030.2789452965011552No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13420.2668172401315397No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12510.24872456587522815No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT11070.2200944000190868No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10900.2167144498832923No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG10090.2006099815892128No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC9760.19404890191384708No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9160.18211966614045483No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9140.18172202494800843No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8870.17635386884998192No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG7950.15806237399744713No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7590.1509048325334118No Hit
GATCGGCTGTGCTTTACCAGCGTCCATAACGGACAGGGCGCATA7460.14832016478251014No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7100.1411626233184748No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6990.13897559676001955No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6950.13818031437512673No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA6780.13480036423933228No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6580.1308239523148682No Hit
CACCAGCGGAACCAGGGACAGCTGCAGACGCGGAGGACCGGTTT6380.12684754039040413No Hit
GTGCAGGGACAGATCCAGCGGTGCATCTGGGTCCTCGTAACGTG6300.1252569756206185No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6250.12426287263950248No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT6230.12386523144705608No Hit
CACAGCCGGCGGACCGGTATCAGACGGAGAGACGGTCGGTGGCG6140.12207584608104723No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5940.11809943415658315No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5630.11193599567366382No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5580.1109418926925478No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5270.10477845420962849No Hit
AATTGGCTGAGCTTTACCGGCGTCCATTACAGACAGCGCACAAA5170.10279024824739645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)