FastQCFastQC Report
Wed 8 May 2024
EGAF00007961637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502966
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41150.8181467534584843No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG35540.7066083989772668No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA28760.5718080347379345No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25710.5111677528898574No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23020.4576850125058155No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16790.3338197810587594No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC15670.31155187428176057No Hit
CAGTGCTTCTGGGAAATGCGTGCAGGCCGCG15050.29922499731592195No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14710.29246509704433304No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14600.2902780704858778No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14210.2825240672331728No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12030.23918117725651436No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC11250.22367317075110446No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10960.21790737346063152No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9950.19782649324208793No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9820.1952418254911863No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9760.19404890191384708No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC9730.19345244012517743No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT8540.16979278917461618No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8090.16084586234457202No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7900.15706827101633114No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7530.14971190895607256No Hit
CAGTGTTTCTGGGAAATGCGCGCGGGCCGTG7490.14891662657117977No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7290.1449402146467157No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7030.13977087914491237No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6850.13619210841289472No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG6700.13320979946954667No Hit
TCCTGGGCCCCGAGCGTATGCGCGCTGTCTG6590.1310227729110914No Hit
GTACACGGCCACACCCAGGGCCCGTGGGACC6580.1308239523148682No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG6460.12843810516018975No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6400.12724518158285053No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6130.12187702548482403No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5950.11829825475280634No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5880.11690651057924392No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5870.11670768998302072No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5680.11293009865477985No Hit
CCGAGCTCCCACCTGCAGTCTGCCACCCAGC5500.10935132792276217No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5490.10915250732653897No Hit
CAGTGCTTCTGGGAAATGCGTGCCGGCCGCG5410.10756194255675333No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5380.10696548076808374No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5130.10199496586250363No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5100.10139850407383402No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5090.10119968347761081No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)