FastQCFastQC Report
Wed 8 May 2024
EGAF00007961638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484871
Total Bases21.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG34850.7187478731456408No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT26270.541793590460143No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20590.42464903036065266No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19300.3980440158310149No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18350.3784511756735297No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA15420.3180227318193911No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15000.3093606340655556No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14200.2928614002487259No Hit
AATCGGCTGGGCTTTACCGGCGTCCATAACAGACAGAGCACATA14170.2922426789805948No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13600.28048697488610375No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12730.26254405811030146No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11780.24295121795281632No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT10660.21985229060925482No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10510.21675868426859926No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG9610.19819704622466594No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC9560.1971658441111141No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9160.18891622720269927No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8830.18211029325325706No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8190.16891090619979335No Hit
GATCGGCTGTGCTTTACCAGCGTCCATAACGGACAGGGCGCATA7350.15158671069212223No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7320.15096798942399112No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG7230.1491118256195978No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7210.14869934477417707No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6610.13632491941155483No Hit
CACCAGCGGAACCAGGGACAGCTGCAGACGCGGAGGACCGGTTT6270.1293127450394022No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6260.12910650461669188No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6180.1274565812350089No Hit
CACAGCCGGCGGACCGGTATCAGACGGAGAGACGGTCGGTGGCG6160.12704410038958816No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT6010.1239504940489326No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6010.1239504940489326No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA5980.12333177278080149No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5940.12250681108996No Hit
GTGCAGGGACAGATCCAGCGGTGCATCTGGGTCCTCGTAACGTG5470.1128135112225726No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5360.11054486657275853No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5290.10910118361378593No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT5200.1072450198093926No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5120.10559509642770964No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4940.10188276881892297No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG4870.10043908585995037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)