FastQCFastQC Report
Wed 8 May 2024
EGAF00007961639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484871
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39550.8156808718195149No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG34370.7088483328555429No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA27100.5589115455451038No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24550.5063202377539593No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24320.5015767080316208No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21030.4337236089599089No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16250.3351406869043519No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC14840.30606078730218966No Hit
CAGTGCTTCTGGGAAATGCGTGCAGGCCGCG14300.2949238044758296No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13780.2841993024948904No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13780.2841993024948904No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13630.28110569615423486No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11260.23222671597187705No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11030.2274831862495385No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC10780.22232717568177926No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9670.19943448876092815No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9660.19922824833821778No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9150.1887099867799889No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC9100.18767878466643706No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8180.16870466577708298No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT7810.16107377013679927No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7510.15488655745548816No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7230.1491118256195978No Hit
CAGTGTTTCTGGGAAATGCGCGCGGGCCGTG7070.14581197885623187No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6990.14416205547454888No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG6610.13632491941155483No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6590.13591243856613408No Hit
GTACACGGCCACACCCAGGGCCCGTGGGACC6490.1338500343390304No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG6220.1282815429258504No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6190.12766282165771928No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6120.12621913869874668No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5850.12065064728556667No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5770.11900072390388372No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5710.1177632813676215No Hit
TCCTGGGCCCCGAGCGTATGCGCGCTGTCTG5670.11693831967678002No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5610.1157008771405178No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5390.11116358784088963No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5360.11054486657275853No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5170.10662629854126149No Hit
CAGTGCTTCTGGGAAATGCGTGCCGGCCGCG5080.10477013473686816No Hit
CCGAGCTCCCACCTGCAGTCTGCCACCCAGC4950.10208900924163335No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG4930.10167652839621259No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4900.10105780712808149No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)