FastQCFastQC Report
Wed 8 May 2024
EGAF00007961640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504790
Total Bases22.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG36880.7306008439152915No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT28420.5630063987004497No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22020.4362210027932407No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19570.38768596842251235No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17900.35460290417797496No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA17110.3389528318706789No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17040.3375661166029438No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15120.2995304978307811No Hit
AATCGGCTGGGCTTTACCGGCGTCCATAACAGACAGAGCACATA14880.2947760454842608No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14040.2781354622714396No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13880.27496582737375935No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12740.2523821787277878No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA11410.22603458864082093No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT11410.22603458864082093No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC10290.2038471443570594No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG9640.19097050258523346No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9090.1800748826244577No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9050.17928247390003765No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8760.17353751064799222No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG7860.155708314348541No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7390.14639751183660532No Hit
GATCGGCTGTGCTTTACCAGCGTCCATAACGGACAGGGCGCATA6950.1376810158679847No Hit
CACCAGCGGAACCAGGGACAGCTGCAGACGCGGAGGACCGGTTT6920.13708670932466965No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6840.13550189187582956No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6670.1321341547970443No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6560.12995503080488915No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA6390.12658729372610394No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6340.12559678282057887No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6220.12321955664731869No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT6200.12282335228510867No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6060.12004992174963847No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5860.11608787812753818No Hit
CACAGCCGGCGGACCGGTATCAGACGGAGAGACGGTCGGTGGCG5780.11450306067869807No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5670.11232393668654292No Hit
GTGCAGGGACAGATCCAGCGGTGCATCTGGGTCCTCGTAACGTG5640.11172963014322787No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5570.11034291487549278No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT5290.10479605380455238No Hit
AATTGGCTGAGCTTTACCGGCGTCCATTACAGACAGCGCACAAA5110.10123021454466213No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)