FastQCFastQC Report
Wed 8 May 2024
EGAF00007961641

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961641
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504790
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41990.8318310584599536No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG36270.7185166108678857No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA29530.5849957408031062No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25990.5148675686919313No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23260.4607856732502625No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17070.3381604231462588No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC17040.3375661166029438No Hit
CAGTGCTTCTGGGAAATGCGTGCAGGCCGCG15090.29893619128746607No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14790.2929931258543157No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14680.2908140018621605No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14290.283088016799065No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12210.24188276312922205No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC11720.23217575625507636No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10950.21692188830999026No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC10490.20780918797915965No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10080.19968699855385405No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9810.1943382396640187No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC9370.18562174369539808No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT8410.16660393430931675No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7680.15214247508865072No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7680.15214247508865072No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7200.14263357039561006No Hit
GTACACGGCCACACCCAGGGCCCGTGGGACC7060.13986013986013987No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7000.13867152677350977No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6940.13748291368687968No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6800.13470948315140951No Hit
CAGTGTTTCTGGGAAATGCGCGCGGGCCGTG6750.13371897224588442No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6610.13094554171041425No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6510.12896451989936408No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG6460.127974008993839No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6420.12718160026941897No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG6150.1218328413795836No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6130.12143663701737356No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6040.11965371738742844No Hit
TCCTGGGCCCCGAGCGTATGCGCGCTGTCTG5870.1162859803086432No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5690.11272014104875294No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5610.11113532359991282No Hit
CCGAGCTCCCACCTGCAGTCTGCCACCCAGC5560.11014481269438776No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5480.10855999524554764No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5300.10499415598565741No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5230.1036074407179223No Hit
CAGTGCTTCTGGGAAATGCGTGCCGGCCGCG5200.10301313417460728No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5150.10202262326908218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)