FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007961642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488059
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG35060.7183557725602847No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT26440.541737781702622No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20060.41101588127664895No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18820.38560911693053507No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17560.35979256606270965No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA15540.3184041273698467No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15460.3167649812830006No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15090.3091839306313376No Hit
AATCGGCTGGGCTTTACCGGCGTCCATAACAGACAGAGCACATA14960.30652031824021275No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13740.2815233404158104No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13040.2671808121559074No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11940.2446425534617741No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC10460.21431835085512202No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10200.20899112607287232No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT10010.20509815411661297No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG9770.20018071585607478No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9310.19075562585670996No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9080.18604308085702753No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8840.18112564259648936No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG7510.15387483890267364No Hit
GATCGGCTGTGCTTTACCAGCGTCCATAACGGACAGGGCGCATA7430.1522356928158276No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7330.15018676020727004No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6900.14137634999047247No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6580.13481976564308823No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6560.1344099791213767No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6560.1344099791213767No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT6470.1325659397736749No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6420.13154147346939613No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA6360.13031211390426156No Hit
CACCAGCGGAACCAGGGACAGCTGCAGACGCGGAGGACCGGTTT6020.12334574303516582No Hit
GTGCAGGGACAGATCCAGCGGTGCATCTGGGTCCTCGTAACGTG5970.12232127673088705No Hit
CACAGCCGGCGGACCGGTATCAGACGGAGAGACGGTCGGTGGCG5920.12129681042660825No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5910.1210919171657525No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5820.11924787781805068No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5590.11453533281836827No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5570.11412554629665675No Hit
AATTGGCTGAGCTTTACCGGCGTCCATTACAGACAGCGCACAAA5100.10449556303643616No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4940.10121727086274405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)