FastQCFastQC Report
Wed 8 May 2024
EGAF00007961643

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961643
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488059
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40370.8271540940746919No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG34600.70893068256092No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA27200.5573096695276596No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25040.513052725182816No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24290.49768573061863425No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20970.4296611680145228No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16700.3421717456291145No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC15290.3132817958484527No Hit
CAGTGCTTCTGGGAAATGCGTGCAGGCCGCG14710.30139798671881884No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14170.2903337506326079No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13760.2819331269375219No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13460.2757863291118492No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10930.22394833411534262No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10710.21944068237651598No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC10530.2157526036811123No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10370.2124743115074202No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC10140.2077617665077378No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9810.2010002888994978No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC9330.19116541237842147No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT8020.16432439520631725No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7950.16289014238032698No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7840.16063631651091365No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7160.14670357477272214No Hit
CAGTGTTTCTGGGAAATGCGCGCGGGCCGTG7080.1450644286858761No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7070.14485953542502034No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6790.13912252412105913No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6770.13871273759934763No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6560.1344099791213767No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG6250.12805828803484826No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6190.12682892846971372No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6170.1264191419480022No Hit
GTACACGGCCACACCCAGGGCCCGTGGGACC6160.12621424868714642No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG6160.12621424868714642No Hit
TCCTGGGCCCCGAGCGTATGCGCGCTGTCTG6090.12477999586115614No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6050.1239604228177331No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5810.11904298455719493No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5260.10777385521012828No Hit
CCGAGCTCCCACCTGCAGTCTGCCACCCAGC5130.10511024281900344No Hit
CAGTGCTTCTGGGAAATGCGTGCCGGCCGCG5120.10490534955814768No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5040.10326620347130162No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5010.10265152368873434No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC4960.10162705738445557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)