FastQCFastQC Report
Wed 8 May 2024
EGAF00007961645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences538942
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24020.44568803322064343No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8720.16179848666461324No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7940.1473256862519529No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7320.1358216654111203No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6570.12190551116817766No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6450.11967892648930682No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG5970.11077258777382354No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5960.11058703905058428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)