FastQCFastQC Report
Wed 8 May 2024
EGAF00007961647

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961647
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521559
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25710.492945189326615No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22830.4377261249446371No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8460.16220600162206003No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7670.14705910548950357No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7070.13555513374325817No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6460.12385942913457537No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6380.12232556623507598No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG5860.11235545738833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)