FastQCFastQC Report
Wed 8 May 2024
EGAF00007961649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542919
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23700.4365292060141568No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9260.17055951256080557No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7610.14016823872437695No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7450.13722120610993538No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6700.12340699072974054No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6650.12248604303772755No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6420.11824968365446781No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG5930.10922439627274051No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)