FastQCFastQC Report
Wed 8 May 2024
EGAF00007961651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522219
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26160.5009392611145899No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23230.4448325319454099No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8640.1654478293589471No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7470.143043435799923No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6880.13174549374879121No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6600.1263837585380846No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6140.11757519354906659No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG5700.1091496096465276No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)