FastQCFastQC Report
Wed 8 May 2024
EGAF00007961653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499636
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8370.16752195598395633No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7480.14970898814336836No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7250.14510563690366587No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6340.1268923776509299No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5900.11808596658367292No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC5670.11348261534397042No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5090.10187416439167714No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)